Jpred2 (http://www.compbio.dundee.ac.uk/~www-jpred/) predictions for protein ZP1_MUMU (database accession number AAB60507)

YourSeq    : MAWGCFVVLLLLAAAPLRLGQRLHLEPGFEYSYDCGVRGMQLLVFPRPNQTVQFKVLDEFGNRFEVNNCSICYHWVTSEAQEHTVFSADYKGCHVLEKDGRFHLRVFIQAVLPNGRVDIAQDVTLICPKPDHTVTPDPYLAPPTTPEPFTPHAFALHPIPDHTLAGSGHTGLTTLYPEQSFIHPTPAPPSLGPGPAGSTVPHSQWGTLEPWELTELDSVGTHLPQERCQVASGHIPCMVNGSSKEACQQAGCCYDSTKEEPCYYGNTVTLQCFKSGYFTLVMSQETALTHGVLLDNVHLAYAPNGCPPTQKTSAFVVFHVPLTLCGTAIQVVGEQLIYENQLVSDIDVQKGPQGSITRDSAFRLHVRCIFNASDFLPIQASIFSPQPPAPVTQSGPLRLELRIATDKTFSSYYQGSDYPLVRLLREPVYVEVRLLQRTDPSLVLLLHQCWATPTTSPFEQPQWPILSDGCPFKGDNYRTQVVAADKEALPFWSHYQRFTITTFMLLDSSSQNALRGQVYFFCSASACHPLGSDTCSTTCDSGIARRRRSSGHHNITLRALDIVSSPGAVGFEDAAKLEPSGSSRNSSSRMLLLLLAITLALAAGIFVGLIWAWAQKLWEGIRY : YourSeq
P79159     : .MWLPQCVLLCASLS.LALSGQHKPEASYSSVLHCGLGGFQFTVN.EATSPPVLISWDKQGLLHKLQNDSDCGTWIRKGPGSSVVLETNYSSCYVTEWDSHYIMPVGVEGAGAAEHKTVTERKLLKCPMD..................................................................................LLARDAPGTDWCG..SIPAGDRLPCAPSPISRGDCEKRGCCYSPGEVNSCFYGDTVTLDCTQEGHFSIAVSRNVASPP.LLLDSVHLTFRNDVCKPVIATQAFVLFRFPFTSCGTTKQITGDQAVYENELMATRDVKNGSSGSVTRDSIFRLRVSCSYSVSNSLPVNVQVFTLPPPFPETQAGPLTLELQIAKDKNYGSYYGVGDYPVVKLLRDPIYVEVSILHRTDPHLELFLHQCWATPSTDPLSRPQWPILVKGCPYTGDNYQTQLIPVQKALLPFPSHHQRFSIFTFSLVDTSVKQALRGPVYLHCSVSVCQPAEPPSCVVTCPD...LSRRRRNSDTSFQNTTASVSSKGPMILLQATKDPPEKL....RASKLPWVAGLTGTLILGALLVSYLAIRKRMNYPNQM : P79159
O54766     : MAWGCFVVLLLLVAAPLRLGQHLHLKPGFQYSYDCGVQGMQLLVFPRPNQTIQFKVLDEFGNRFEVNNCSICYHWVISEAQKPAVFSADYKGCHVLEKDGRFHLRVFIQAVLPNGRVDTAQDVTLICPKPDHILTPESYLAPPTTPQPFIPHTFALHPISGHTLAGSGHTGLTTLYPET...HPTPAPPSSEPGPVGPTVPQSQWGTLGSWELTELDSIGTHLLQERCQVASGHIPCMVKGSSEEACQQAGCCYDNTKEMPCYYGNTVTLQCFRSGYFTLVMSQETALTHGVMLDNVHLAYAPNGCPPTQKTSAFVVFHVPLTLCGTAIQVVGKQLVYENQLVSNIEVQTGPQGSITRDGVFRLHVRCIFNASDFLPIRASIFSPQPPAPVTRSGPLRLELRIATDKTFSSYYQGSDYPLVRLLQEPVYIEVRLLQRTDPGLALMLHQCWATPSASPFEQPQWPILSDGCPFKGDNYRTQMVAADRATLPFWSHYQRFTIATFTLLDSSSQNALRGQVYFFCSASACHPVGSETCSTTCDSEIARHRRSSGHHNSTIRALDIVSSPGAVGFEDAPKLEPSGSTRNSGSRWVLQLLALTLVLGDGVLVGLSWAWAWA....... : O54766
BAA90655   : MRWNASSWGLLVALGFCALVSSVQG...FWDGLRCGPTIMQFSVP.VQDVAFVLSAVDHSGKSHYLGNNTACGTWVGQKPDGSLVVNAAYDGCYVREENGDHVMTVSLEEVING..HVDYHKQELKCPI...................................................................................MEAMDVPSPDTCS..AIKREDRLSCAKAPVSQDLCQGLGCCYTPDPSMPCYYGNKLTAQCTTDSNMLVAISKDLTKPS.LSLNSISVVGVDQSCPSVSKTNAFIMFQFPLS.CGATKRMDGNIITYESTVVSARDIRTWRGSSITRDSTMKLTVRCIYGRTIAPLLKVEVYTLPPPPPISTPGPLMLEMRIARDMQYTTYYADGDYPVIKILRDPVYLEVRVLRRLDPNLVLVLNNCWATPSTDSTAQPQWPVLTSRCPFPGDNYITQMIPVGAATVPFPSHYQRFSISTFTFVDGTTQLPLGGMVYFHCSASVCIPSAADTCRIVCNT...RKRRMAEESPAVYPLETTVTSDGPVDFIDGEEKRTETEGVVFGYPWARGAAAIGGVLTVTVTFIGLWIHYRNRSPKTHD : BAA90655
Q92098     : VTHEADLPVRLVQGGSCSGRVEILYGWGEDATVVCRQLGCGYAVYASYLSHCLFNGWNSHDCSHGEDASVICSHDAYGTTVDAGPTTGYYGACYSHPCTNLPYYPYHESTTLPGAEDTTHSSVCQRNPCQHGGTCVEYWNYPYYQCYCPSYWWGTNCEYYGAHSTDAPESTTLPRAEDTTHSSVCQRNPCQHGGTCVEYWNYPYYQCYCPYGAHSTDAPPMPAWRNLNCEYYGAHSTDAPELTTHPCQNGGSCTNLYYPYRCHNCEYYYYGSTSSPELDSTLSPDVPVRLVWCQGRVEVYYAGGVCDDAEVVCRQLSCGYAVSASGQIWLDDVNCYGQESSLARCNHSGWGRHNCGHNEDASVICSRAPSTTPITSPTNAPSNSTIPLSEISSRGLSVYDIRLQDARLYGPLNGCGSRTIIYMNTAYGYVSPNGAKRLRVPMFCYMGRAMATFTPRVQDEVSMGLFDLRVRFYMNQFFHQEVALTSAALQLETCKVSFLLQNGCRVDDRRRFSVGAQVYLECSVRVCNVSDWGSCRRGCLRGSRAARDLGEARHADH...SVDLSQGPIRLRKTGRASLEEHG...SAGWTGMVYALAATLAVSAVCVAAVKIYRLRAGKIQY : Q92098
O08523     : SKVQQLCSLIPNQNAGFAKCHSKVNPSCDGGAVQTACSWLQNYASTPPNSHYESCVSVCQPRCAAIRLKSDCNHYCVEGCQCDAGYVLNGKSCILPHNDGKYYEPTSYCLAAGGGVFRTFDGAFLRFPANCAFVLSTICQKLPDISFQLIIN....FDKWSSPNLTIISPVYFYINEEQILINDRNTVKVNGTQVNVPFITGLATKIYSSEGFLVIDTSGKPVVSSVNELQFSQYAATCDNVHIQAMQGDGYCLKLDMKQPCYYESCYLDGCYNHKKFQLCGSLAAYGEACLSTEWIEKENCSGDCPSGIEGEDFISFQINNTKCGNIVQSNGTHIMYKNTIWIESANNTG..NIITRDRTINVEFSCAYELDSLDSVVKPMLSVINLTVPTQEGSFTTKMALYKNASYKHPYRQGE..VVLTTRDVLYVGVFVVGADSTHLILTLNKCYATPSRDSNDKLRYFIIEGGCQNIKDN....TIGIEENG...VSLTCRFHVTVFKFIG......DYDEVHLHCAVSLCDSE.KYSCKINCPQNSRIATDYSKEHKEQIISVDWCEDNGGCEQICTSRVDGPLCSCVGSLQRSCRASNSSVELQVWTLLLIMTQISLWHLVYKSG : O08523
Q9W645     : AMAVFGAVFFLGLLGPFALVVGTWSRPFDPGLLACGQGSLQLTLP.EGNASFVLTAWDTEGKAHALQNDSGCGLWVSDALDGSRVVSVSYTSCYVFGWDGNYFIIVGLEGTDAAGQKVVHEEKLFMCPAD..................................................................................LPALDAPSSSVCS..AVRSQDRLPCASLPISQGDCEVRGCCYNPDKVKTCYYGNTVTAHCTPDGQFSIAVSRDVTLPP.VILDSVHLASGHSGCVPVVKNKAFVVYQFPLSACGTTFQVTGDQAVYENELVASRDVKTGSLGSVTRDSTFRLHVRCSYAITTFVPLSVQVFTLPPLPAVSQPGPLSLELRVASDERYSSYYTDNDYPVVKALRDPIYIEVRILQRTDPDLVLVLHHCWATPSINPHQQTQWPVLVNGCPYAGDNYQTQLVPLSTASLLFPSHYQRFTLYTFTFVDSASQEVLSGLVYLHCSASVCHRSVQESCANTCPA...RARGKRSAEHTLKDSASRVSSKGPVIFLQDELRRVADVN.DFRAAWALGFAAVAAGAVLGMVLVAAVLWWRK....... : Q9W645
ZPB_PIG    : .MWLRPSIWLCFPLC.LALPGQSQPKAADLGGLYCGPSSFHFSINLDTATPPALVVWDRRGRLHKLQNDSGCGTWVHKGPGSSMGVEASYRGCYVTEWDSHYLMPIGLEEADAGGHRTVTETKLFKCPVD..................................................................................FLALDVPTIGLCD..AVPVWDRLPCAPPPITQGECKQLGCCYNSEEVPSCYYGNTVTSRCTQDGHFSIAVSRNVTSPP.LLWDSVHLAFRNDECKPVMETHTFVLFRFPFSSCGTAKRVTGNQAVYENELVAARDVRTWSHGSITRDSIFRLRVSCIYSVSSALPVNIQVFTLPPPLPETHPGPLTLELQIAKDERYGSYYNASDYPVVKLLREPIYVEVSIRHRTDPSLGLHLHQCWATPGMSPLLQPQWPMLVNGCPYTGDNYQTKLIPVQKASLLFPSHYQRFSVSTFSFVDSVAKQALKGPVYLHCTASVCKPAGAPICVTTCP....AARRRRSSDIHFQNGTASISSKGPMILLQATRDSSERLHKYSRPPHALWVAGLLGSLIIGALLVSYLVFRKWR...... : ZPB_PIG
Q91236     : NSLVAQVVLIYLVWTNVEVLGSRR..SRSERGGRIIVQQTGHYHP.QQRRRLHHDFSPQNPG.AEPPQTPQQPTYPQQPQQPQQPQQPKYPQQPQQPQPQQPKYPQPKYPQQPQQPQQPQQPKYPQQPQQP....................................................KNP..............Q..PKNPQPPQPQKNPQ.PTKQQVSDDGVDPYLRIQCGVDDITAAECEALKCCFEG...YQCFFGKAVTVQCTKDAQFVVVVAKDATLPN.LIINTISLQGE.GQCTAVDSNSEFAIFQFPVLACGSVVTEEPGTIIYSNRMTSSYEVDVGPNGVITRDSFFELQFQCRYTGLIETVVIEILPSNTPPRPVAALGPIRVQLRLGNEAAYTSYYTEGDYPVTKVLRDPVYVEVRLLEKRDPNLVLTLGRCWVTNSPNPHHQPQWDLLIDGCPYADDRYISSLVPVGPSSVNFPTHYKRFIFKMFTFV.SSTLEP....QRRRCTFTVVQLS..............................ALVTQAAPVSRHATG................................................ : Q91236
P79817     : TVFSALALLCSFLGTEVDAQKGNP..VPPPYYPQPKPQDPQHVSPPSNPQYPSYPQTPQNPQVPQNPQVPQNPQYPSYPQNPSYPQNPSYPQYPSNPPSQNPSYPVPQYPSKPQPPQNPQVPQYPSKPQPP....................................................QNPQVPQYPSKPQNPQYPSKPQYPQAPQQPQNPQYPSKPQDPGKEVPRDVRVPCGVPDISPSACDAIDCCHDG...QSCYFGTGATVQCTKDGHFIVVVAKDVTLPH.IDLETISLLGQ.GDCGPADSNSAFAIYYFPVTYCGTVVMEEPGVIVYENRMTSSYEVGVGPLGAITRDSSFELLFQCRYRATVETLVVEVQPP.DSPLSIAELGPLNVYLQIANAAAYTSFYTDADYPVTKVLRDPVYVDVQILGRTDPNLVLTLGRCWATTSPNAFSLPQWDILIDGCPYADDRYLSALVPIDHSSLPFPTHHSRFLFKMFTFV.PHSMEPLREKVYIHCSTAACVPGQGVSCEPSCSR..RKGRDTEAVAIRTD.ERRVVVSSGEVLMLAAADEPSEQ.......................................... : P79817
Q9W646     : IHFCLLAVTLHNLADGQGDKVGQPPHTPQPQHPQ.QPQQPQYPSKPQNPQQPQYPSKPQNPQQPQYPQNPQQPQYPSKPQQPHQPQNPQQPQYPSKPQPQQPQYPQPQYPSKPQQPQNPQQPQYPSKPQQPQY.................................................PQNPKQPQYPSKHQNDQQPQYPQNPKQPQQPQNPKQPQQPQQPQQEVDEYYKIPCGSSNITASECDAINCCYDG...HTCYYGKYVTLQCTKDGQFIIVIAKDATLPH.IDLESVSFLGS.GECHPAGASSAFAIYQFPVTSCGTIMKDEPGVLVYENRMSSFYEVAIGPRGAITRDSHFELSVQCRYIGTVEALVTEVDLV.PPPGPVAAPGILRVELRLGNDVAYTSYYNDADYPVTKVLRDNVYVEVRMLERTDPNLVLTLGRCWATTSSFSNSVPQWDLLINGCPNIDDRYLTTLVPVDPSSLPFPTHYRRFIFKMFTFVGPSKKAPLKEHVYIHCDVSVCQPTLSNNCEPLCPL..RKARDVSGSTRKAYREETVVVSSDEIVFTAASP............................................... : Q9W646
Q90311     : QRLTNQQFPLEKPVQQLTNQQFPLQKFPQKPVQQLTNQQFPLEKPVTNQQFPLQKPVQQLTNQQFPLEKPVQQLTNQQFPLQKPVQQLTNQQFPLQKPQQLTNQQNQQFPLQKPVQQLTNQQFLLQKPVQQLT.................................................NQQFP...............LPKPVQQLSKPQITK.PVKQQFPKPVVADFEQIQCGPPGISGAECEAINCCFNG...QHCFYGRAVTVQCIRDGQFVVVVSRDVILPR.LSLDSVHLLGGNDPCAPVGSTPSFVIYQFPVTACGTSVMEDGGYVVYENRMTSSYEVEIGPYGSITRDSHFEFLFQCRYSGTVEALVVEVNSV.PPPPPVAAPGPLRVELRLANDEAYTSYYSDADYPITKVLREPVYVEVHIMERTDPNIVLMLGHCWATSTPNPLSLPQWDLLIDGCPYRDDRYLTTLVPVTGSSLQFPTHYKRFIVKMFTFV.PASLAALQETIFIHCSTEVCHPSSG.SCEQSCT...RKRRDTRIKAVSG...EQTVVSSGEVTMVM.................................................. : Q90311
O42465     : ..............................KWSYQLPQKLAQPLP.AQP.LPQWPVQP.......LPQRPAEP....LPQRPAQP....LPQWPVQP.PQRPAEPLPQRPAQP.LPQRPVQP.LPQRPAQP.......................................................................FLQKPAQPIPQRIPY..TKDDTKQTEVVDKDKVSCGLSGITAAQCQAISCCFDG...RMCFYGKTVTFQCTKDGQFVVVVSRDATLPN.LELDSISLLGANGHCTPVGTTSAFAIYQFKVTECGTVVTEEPDTIVYENRMSSSYVVGIGPFGDITRDSHYDLVFQCRYTGTVETLVIEVKTYPNPNPVVTVDAVLNVELRLANQEAYTSYYTVADYPVTKVLRDPVYAEVRILGMTDPNVVLTLEQCWATTDPTGDRLPRWDLLVNGCPYQDDRYLTVPIASDSSYPPFLSHYKRFVFKMFTFV.PTSMVPLQENVYIHCRATVCHALAG.SCEQRCN...RQRRDLSAQGQKKT.KGDVVVSSQKVIMIDPSLYA............................................. : O42465
consv      : -------------------------------12--242-312-11--3---3-1-212-------1-214243------311--5----3155141--251213241111412---1221-1-2323-2-------------------------1---------------1------2----------------------------------2-223--31-111--23--11234731-243-11842124-333---11-653334511652223724667235222-152433823141-3---36215-2664625244-6-54332352245738373221-4225--62656821326-3581412121136211122-264-126--93325383843312831363265--863555336-63626213245-7173814877-341141-2457177213845-2761---28643-33---173525-16256338-----------5433-24268112----1---1---------------------2132513171312-------------------------------------------------- : consv

           : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351-------361-------371-------381-------391-------401-------411-------421-------431-------441-------451-------461-------471-------481-------491-------501-------511-------521-------531-------541-------551-------561-------571-------581-------591-------601-------611-------62- :
OrigSeq    : MAWGCFVVLLLLAAAPLRLGQRLHLEPGFEYSYDCGVRGMQLLVFPRPNQTVQFKVLDEFGNRFEVNNCSICYHWVTSEAQEHTVFSADYKGCHVLEKDGRFHLRVFIQAVLPNGRVDIAQDVTLICPKPDHTVTPDPYLAPPTTPEPFTPHAFALHPIPDHTLAGSGHTGLTTLYPEQSFIHPTPAPPSLGPGPAGSTVPHSQWGTLEPWELTELDSVGTHLPQERCQVASGHIPCMVNGSSKEACQQAGCCYDSTKEEPCYYGNTVTLQCFKSGYFTLVMSQETALTHGVLLDNVHLAYAPNGCPPTQKTSAFVVFHVPLTLCGTAIQVVGEQLIYENQLVSDIDVQKGPQGSITRDSAFRLHVRCIFNASDFLPIQASIFSPQPPAPVTQSGPLRLELRIATDKTFSSYYQGSDYPLVRLLREPVYVEVRLLQRTDPSLVLLLHQCWATPTTSPFEQPQWPILSDGCPFKGDNYRTQVVAADKEALPFWSHYQRFTITTFMLLDSSSQNALRGQVYFFCSASACHPLGSDTCSTTCDSGIARRRRSSGHHNITLRALDIVSSPGAVGFEDAAKLEPSGSSRNSSSRMLLLLLAITLALAAGIFVGLIWAWAQKLWEGIRY : OrigSeq

jalign     : ----HHHHHHHHH--------------------------------------EEE----------------------------------------------------------------------------------------------------------------------EEE-------------------------------------------------------------------------------------EEEE--EEEEEE----EEEEEEE------------EEEE--------------EEEEEEE------EEEE----EEEEE-HHHH-HHH-------EE----EEEEEEEEE----EEEEEEE--------------HHHHHHHHH------EEE-----EEEEEE---EEEEEEEE------EEEEE------------------EE-----------EEEEEE------------EEEEEEEEEEE-----------EEEEEEEEEE-------------------------------EEEEEE----EEEEE---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------- : jalign
jfreq      : --HHHHHHHHHHHH-HHH--------------EE-----EEEEE-------EEEEEE------EE-------EEEEEE----EEEEEE----EEEEE----EEEEEEEEEE-----EEEEE-------------------------------EEEE----------------EEE----------------------------HH--------------------------------------------------------------EEEEE----EEEEEEE-------------------------------EEEEEE-------EEEE---EEEEEEEEEEE---------EEEE---EEEEEEEEE-----EEEEEE--------------HHHHHHHH---------------EEEEEE---EEEEEEEE------EEEEEE-EE------------EEEEE-------------E-------------HHHHHHEEEEEE----------EEEEEEEEEE--------------------------------EEEEEE----EEEEE---------------EEEEE------------------------------ : jfreq
jhmm       : ------EEEEE----------------------------------------EE---------------------------------E-------E----------------------------------------------------------------------------EEEE----E----------------------------------------------------------------H-H-------------------EEEEEE-----EEEEEE--------EEE--EEEE-------------EEEEEEEE------EEEE---EEEEEEEEEEEEE---------EE--EEEEEEEE-------EEEEEE---------------HHHHHHHH--------------EEEEEE---EEEE-EE-------EEEE-------------------E-----------EEEEEEE------------EEEEEEEEEE------------EEEEEEEEEEE-------------HHHH--------------EEEEE----EEEE----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ : jhmm
jnet       : --HHHHHHHHHHHHHHHH--------------E-------EEEE-------EEEEEE-------E--------EEEE------EEEEE----EEEEE----EEEEEEEEE------EEEE--------------------------------EEEE---------------EEEEE-------------------------------------------------------------------------------------------EEEEE----EEEEEEEE------------EEEE--------------EEEEEEE-----EEEEE---EEEEEEEEEEEE---------EEE--EEEEEEEEEE----EEEEEEE---------------EEHHHHH---------------EEEEEE---EEEEEEEEE-----EEEEE--EEE-----------EEEEE------------EEE--------------EEEEEEEEEE----------EEEEEEEEEEE-------------------------------EEEEEE----EEEEE---------------EEEEEHHHHHHHHH--HHHHHHHHHHHH------- : jnet
jpssm      : --HHHHHHHHHHHHHHHH---------------------EEEEEE------EEEEEE------EEE-------EEEE-----EEEEEE----EEEEE----EEEEEEEE------EEEE---EEE--------------------------EEEEE-------EEE-----EEEEEE----E----------------EE----EE-------------------------------------------------------------EEEEE----EEEEEEEE-------------EEE-------------EEEEEEEE-----EEEEEE--EEEEEEEEEEE----------EE----EEEEEEEE------EEEE-----------------EEEEEEE--------------EEEEEE----EEEEEEEEE-----EEEEE--EEEE-----------EEE-------------EE---------------EEEEEEEEE-----------EEEEEEEEEEE-------------------------------EEEEEE----EEEEE---------------EEEEEEEHHHHHHH--HHHHHHHHHHHHHH----- : jpssm
mul        : --------EHH----------------------------EE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEE-------------EEEEE-----EEEEE-----------H--EEE---------------EEEEEE-------EEE----EEEE-----------------------EEEEEEE---------EEEEE---------------EEHHHHH---------------EEEEE----EEEEEEE------EEEEE-----------------EEE------------EEEEE---------------EEEEEE-------------EEEEE-EEEEE--------------------------------EEE-----EEEEH-------------------------------------------------- : mul
nnssp      : HHHHHHHHHHHHH--------------------------------------------------------------------------------------------------------------EE----------------------------------------------EEE------EE------------------------------------------------------------------------------------EEEEE------EEEEE-------EEEE----EE---------------EEEEEEE--------------EEEE----------------------EEEEEEEEE---------------------------EEEEEE-----------------EEE-----EEEEEE-------EEEEE------------------EE-------------------------------EEEEEEEE------------EEEEE---------------------------------EE----EE-----EEEE-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------ : nnssp
phd        : ---EEEEEEEEEE----------------------------E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EE---------E---EEEEEE----EEEEEEEE--------E-EEEEEEE------------EEEEEEEEE----EEEE----EEEEEE----EEEE--------------EEEEEEEEE---EEEEEEEE---------------EEEEE--------E--------EEEEE---EEEEEEEEE-----EEEEEE-----------------EEE-----------EEEEE-------------EEEEEEEEEE----------EEEEEEEEEE----------------------------------EEEE----EEEEE----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- : phd
pred       : ---HHHHHHHHHHHHHHH---------------------EEEEEE--------EEE----------------EEEEE-----EEEEEE-----EEEE-----EEEEEEEEEE------HHHHHH------------------------------------------------------------------------------------------------------EEE--------------------------------------EEEEE----EEEEEEE------------EEEEE-------------EEEEEEE------EEEEE---EEEE---EEEEEEE-----------HHHHHHHHHH-----EEEEEEEEE-------------HHHHHHHH----EEEE-------EEEE----EEEEE---------EEEEHHHHH-------------EEEE----------EEEEEE------------HHHHHHHEEE-----------EEEEEE---------------------HHHHH-----------EEEE-----EEEHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- : pred
zpred      : ------EEEEE----------------------------EEE----------EEE----------------------------EEE------EEEE-------EEEEEE--------EE-------------------------------------------------------------------------------------------------------------------EEEE-------------EE-------EEE----EEEEE----EEEEEEEE-------HEEEEEEE------EEEEEE-HEEEEEEE-----EEEEEEE---EEEEEHHHEEEEE------EEEEE---EEEEEE------EEEEEEEEE------EEEE----EEHHHHHHH--EEEEE---EEEEEEEEEEEEEEEEEEE------EEEEEEEEEEE----------EEEE---EE-------EEEEEEE-----------EEEEEEEEE-----------EEEEEE--EEEE--------------------------------EEEE----EEEEH-------------------------------------------------- : zpred

Jpred      : --HHHHHHHHHHH----------------------------E---------EEE--------------------------------E-------E----------------------------------------------------------------------------EEEE--------------------------------------------------------------------------------------------EEEEE----EEEEEEE-------------EEEE-------------EEEEEEEE-----EEEEE---EEEEEEEEEEEE---------EE----EEEEEEEEE-----EEEEEE---------------HHHHHHH---------------EEEEEE---EEEEEEEE------EEEEE------------------EE-------------EEE--------------EEEEEEEEEE----------EEEEEEEEEEE-------------------------------EEEEEE----EEEEE---------------E-HHHHHHHHHHHHHHHHHHHHHHHHHHH------ : Jpred

PHDHtm     : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTTTTTTT----------- : PHDHtm
MCoil      : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : MCoil
MCoilDI    : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : MCoilDI
MCoilTRI   : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : MCoilTRI
Lupas 21   : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 14   : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 28   : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

PHDacc     : --BBBBBBBBBBBBB-BBBBB----------BB-BBB-BB-BBB------BBBB-BB-----UB-B-----BBUBBU-------BB-B-U--BUB------BBB-BBB-BB------U-----BB-U-----BBBB-BBBUB--BBUBBBBBBBBBB-BBBBBBBBBBUBBBBBBB--BBBBB-U--U-------UB--B--BU--U-----B-BU-U----UB----BBBBB-B-BBB--BB--BB-BBBBBB-----BBBBBB-BBBB-BU----BBBBBB--BBB--BBBBBBBBBBB----BU-B--BBBBBBB-BBBBBBBBBB-B-B-BBBB-B-BBBBU-B--B--BBBBU-BBB-BBB-BBB-BBB-BBBBBBBB-U---U-BBU-B-BBB-BUBB---BBBBBUU---UBBB-BB---BUBBBBBB--U---BBBBBB-BBB--------U--B-BBB-BB-UU---BBBBBBBB---BB-BB-BBB-BBB-BBBBB--BB--BB--UBBBBBBBBBBUB----BB-BBB---B--B-------B------BBBBB-B-BBBBBB-------B---B-B-BBBBBBBBBBBBBBBBBBBBBBBBB--UB----- : PHDacc
Jnet_25    : BBBBBBBBBBBBBBBBB--------------BB-BBB-BB-BBBBB-----BBBBBBB----B--B----BBB-BB--------BB-B-B-BBBB------BBBBBBBBBB-------B----BB-BBBB---BB---BBB-B-----BBBBBBBBB-B--B-BB----B-BB-BB-----B---B-----------B-B------B--B--B-BB--B---B----B------B-BB---BB--BB-B--BB--------BBBB--B-B-BB----BBBBBBB-B----BBBB-BBBB-B----B-----B-BBBBBBB-B-BBBBBB-B----BBBBBBBBBBBBB--B--BBBBBB--B-BBBBB-B-----BBB-B--------B--B--BBB-BBBBBB----B-B-B----BBBBBBB-B-BBBBBBBB-----BBBBBB-BBBBB--------B-BBBB---B-----BBBB-BB-B-----BB--BB-BBBB-BBBBB------BB---BBBBBBBBBB-------B---B---B------------------BB-B---BBB-B--------------B-BBBBBBBBBBBBBBBBBBBBBBBBB--BB--B-- : Jnet_25
Jnet_5     : --B-BBBBBBBB---------------------------B-B-B-------B-----------------------B--------B-------B-B----------B-----------------------------------------------BB-------------------------------------------------------------------------------------------B--------------------B-B-B-----B-BBBB-------------B-B---------------BBBB-B---------------BBB-B-B-B-----------B-----B-B-B-B---------B------------------B-B-B-B---------------BBB-BB---B-B-B-B-------B-BBB--B-BB------------BB-------------------------------B-B-BB-B------------B-B-B-B-BB-----------------------------------B-----B---------------------BBBBBBBBBBBBBBBBBBBBBBBB--------- : Jnet_5
Jnet_0     : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------BB----------------------------------B-------------------B-----------------------------B----------------------------------B-------------------B----------B------------------B-----------------------------------------------------------------------------------------------------------------------------------------------B------------B-B------------- : Jnet_0

PHD Rel    : 98311267664314554355568989997776454665552114988766734545566677778988877777667888777776777777645678887635667555577777777788766688988778887777897887777765211131221110112434313577665667889999989988877777777778877888888789987778788757665566887867721211433121789785311123167774146638999984268888621212334224878888766532489897513465267505775999851323122244788731244232478898875343248997424689998779999724688624553332202446763143212652798997544789645553123466799989887762110576348775421333134677778742313689998762487666467428999975521478787754568887654344555555556652256538845786248778778887777413544555544556445667768999987335789 : PHD Rel
Pred Rel   : 00778000050886558667777809980767778896655977687776755586677097555778988008688899906669956690099888997767765566688876568675556789999880000000000000000000088790999098899999988809000000000000000999999988989988990880999999988989866676888777778988805685568878998907787789779988779768900956768888966555667669999787788665990977777788768857990906556655550859999776777667677775766886666068875000000078896668767885776856666789996608656765677770687000008006665578999999999806000789999999566975679988889997088888700807899886888558899686507789999887776677666578697877635665776799967878855608999988776787089000099988680088800990997766000 : Predator Rel
Jnet Rel   : 45999999999986456527888888898752103663014774379998089787316887402279986642665299973578732774278727981477877763388852354033014278888878998777888889998852366325677731130477615750335401233788988888753124366102568888888889999876765213478867899999874548999989998536655689426896468649999851256899852362156528999840103880899998268885299973874999978998622589999926236713799988636886123434179999987632536211011112688876666799617999648853477899706998279996233643478899998714370898789996101222067677899886404777555412899888899829999878986189999987426885666543455457744323399848847863278989889887766414430233331221331344566677642755776 : Jnet Rel

Key:
consv      - Conservation number (+) = 0; (-) = 10
phd        - PHD prediction
dsc        - DSC prediction
pred       - PREDATOR prediction
nnssp      - NNSSP prediciton
zpred      - Zpred prediction
mul        - Mulpred prediction
jnet       - Jnet prediction
jalign     - Jnet alignment prediction
jhmm       - Jnet hmm profile prediction
jpssm      - Jnet PSIBLAST pssm profile prediction
jfreq      - Jnet PSIBLAST frequency profile prediction
Jpred      -  Consensus prediction over all methods

PHDacc     - Solvent Accessibility

PHD Rel    - PHD Reliability
PRED Rel   - Predator Reliability
NNSSP Rel  - NNSSP Reliability
PHDHtm     - PHD transmembrane prediction
MCoil      - MultiCoil prediction (+ Dimer and trimer predictions)
Lupas      - Lupas Coil prediction (21,14,and 28 window sizes)

Note on coiled coil predictions  - = < 50% probability
                                 c = >50% <90% probability
                                 C = >90% probability